org.genepi.means
Class Termit

java.lang.Object
  extended by org.genepi.Task
      extended by org.genepi.means.TinaShell
          extended by org.genepi.means.Termit
All Implemented Interfaces:
FeatureHandler

public class Termit
extends TinaShell


Field Summary
 
Fields inherited from class org.genepi.means.TinaShell
cmd, isFramed, itResults, progName, seqMother, shellCommand
 
Fields inherited from class org.genepi.Task
inputs, outputs
 
Constructor Summary
Termit()
           
 
Method Summary
 void attrUsMinLen(java.lang.String ml)
           
protected  void extractRecords()
           
protected  void prepare()
           
protected  void setScriptName()
           
 
Methods inherited from class org.genepi.means.TinaShell
execute, featureReady
 
Methods inherited from class org.genepi.Task
afterExec, beforeExec, flush, getConfiguration, getInputs, getOutputs, getOwningKS, message, process, setConfiguration, setInputs, setOwningKS
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Termit

public Termit()
Method Detail

attrUsMinLen

public void attrUsMinLen(java.lang.String ml)

setScriptName

protected void setScriptName()
Specified by:
setScriptName in class TinaShell

prepare

protected void prepare()
Specified by:
prepare in class TinaShell

extractRecords

protected void extractRecords()
                       throws MeanException
Specified by:
extractRecords in class TinaShell
Throws:
MeanException