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java.lang.Objectorg.genepi.Task
org.genepi.means.TinaShell
org.genepi.means.RbsFinder
public class RbsFinder
Field Summary |
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Fields inherited from class org.genepi.means.TinaShell |
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cmd, isFramed, itResults, progName, seqMother, shellCommand |
Fields inherited from class org.genepi.Task |
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inputs, outputs |
Constructor Summary | |
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RbsFinder()
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Method Summary | |
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void |
attrPattern(java.lang.String pat)
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void |
attrRbsRegionLen(java.lang.String ml)
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protected void |
extractRecords()
Cette methode parse le fichier TINA resultat et instancie les intervalles correspondants |
protected void |
prepare()
Dump le tina en entree |
protected void |
setScriptName()
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Methods inherited from class org.genepi.means.TinaShell |
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execute, featureReady |
Methods inherited from class org.genepi.Task |
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afterExec, beforeExec, flush, getConfiguration, getInputs, getOutputs, getOwningKS, message, process, setConfiguration, setInputs, setOwningKS |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public RbsFinder()
Method Detail |
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public void attrRbsRegionLen(java.lang.String ml)
public void attrPattern(java.lang.String pat)
protected void setScriptName()
setScriptName
in class TinaShell
protected void prepare()
prepare
in class TinaShell
protected void extractRecords() throws MeanException
extractRecords
in class TinaShell
MeanException
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