org.blackbox.shell
Class BBX_SeqTool

java.lang.Object
  extended by org.blackbox.shell.BBX_SeqTool

public class BBX_SeqTool
extends java.lang.Object


Constructor Summary
BBX_SeqTool()
           
 
Method Summary
static org.biojava.bio.seq.Sequence reverseComplement(java.lang.String creator, java.lang.String type, org.biojava.bio.seq.Sequence seq)
           
static org.biojava.bio.seq.Sequence subSequence(int from, int to, java.lang.String creator, java.lang.String type, org.biojava.bio.seq.Sequence seq)
           
static org.biojava.bio.seq.Sequence translate(java.lang.String creator, java.lang.String type, org.biojava.bio.seq.Sequence seq)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BBX_SeqTool

public BBX_SeqTool()
Method Detail

reverseComplement

public static org.biojava.bio.seq.Sequence reverseComplement(java.lang.String creator,
                                                             java.lang.String type,
                                                             org.biojava.bio.seq.Sequence seq)
                                                      throws java.lang.RuntimeException
Throws:
java.lang.RuntimeException

translate

public static org.biojava.bio.seq.Sequence translate(java.lang.String creator,
                                                     java.lang.String type,
                                                     org.biojava.bio.seq.Sequence seq)
                                              throws java.lang.RuntimeException
Throws:
java.lang.RuntimeException

subSequence

public static org.biojava.bio.seq.Sequence subSequence(int from,
                                                       int to,
                                                       java.lang.String creator,
                                                       java.lang.String type,
                                                       org.biojava.bio.seq.Sequence seq)