org.genepi.mean.parser
Class BlastParserM9

java.lang.Object
  extended by org.genepi.mean.parser.AbstractParser
      extended by org.genepi.mean.parser.BlastParserM9

public class BlastParserM9
extends AbstractParser


Field Summary
 
Fields inherited from class org.genepi.mean.parser.AbstractParser
annot, from, hand, records, sens, to
 
Constructor Summary
BlastParserM9(FeatureHandler h, java.util.Iterator rec)
           
 
Method Summary
 void dispatchComplet(java.lang.String start, java.lang.String end)
          Alloc. d'une hypothese correspondante a un hit
 void parse()
           
protected  void parseHits(geno.core.util.tina.TinaRecord curRecParam, java.util.Iterator rec)
          Parser de fichier TINA resulat de l'execution d'un BLAST.
 
Methods inherited from class org.genepi.mean.parser.AbstractParser
featureComplet
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BlastParserM9

public BlastParserM9(FeatureHandler h,
                     java.util.Iterator rec)
Method Detail

parse

public void parse()
           throws MeanException
Specified by:
parse in class AbstractParser
Throws:
MeanException

parseHits

protected void parseHits(geno.core.util.tina.TinaRecord curRecParam,
                         java.util.Iterator rec)
Parser de fichier TINA resulat de l'execution d'un BLAST.


dispatchComplet

public void dispatchComplet(java.lang.String start,
                            java.lang.String end)
Alloc. d'une hypothese correspondante a un hit