org.genepi.mean.parser
Class GffParser

java.lang.Object
  extended by org.genepi.mean.parser.AbstractParser
      extended by org.genepi.mean.parser.GffParser

public class GffParser
extends AbstractParser


Field Summary
 
Fields inherited from class org.genepi.mean.parser.AbstractParser
annot, from, hand, records, sens, to
 
Constructor Summary
GffParser(FeatureHandler h, java.util.Iterator lines)
           
 
Method Summary
 void dispatchComplet(java.lang.String start, java.lang.String end, java.lang.String strand, java.lang.String frame)
          Alloc. d'une hypothese correspondante a un hit.
 void parse()
           
protected  void parseGffLine(java.lang.String theline)
          Parser de fichier Gff resultat de l'execution d'un externe.
 
Methods inherited from class org.genepi.mean.parser.AbstractParser
featureComplet
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GffParser

public GffParser(FeatureHandler h,
                 java.util.Iterator lines)
Method Detail

parse

public void parse()
           throws MeanException
Specified by:
parse in class AbstractParser
Throws:
MeanException

parseGffLine

protected void parseGffLine(java.lang.String theline)
Parser de fichier Gff resultat de l'execution d'un externe.


dispatchComplet

public void dispatchComplet(java.lang.String start,
                            java.lang.String end,
                            java.lang.String strand,
                            java.lang.String frame)
Alloc. d'une hypothese correspondante a un hit.