Serialized Form


Package org.blackbox.shell

Class org.blackbox.shell.BBX_Exception extends java.lang.RuntimeException implements Serializable

serialVersionUID: 3257566196189444408L

Serialized Fields

cause

java.lang.Throwable cause
Exception that might have caused this one.

Class org.blackbox.shell.BBX_ShellException extends java.lang.RuntimeException implements Serializable

Serialized Fields

cause

java.lang.Throwable cause
Exception that might have caused this one.


Package org.genepi

Class org.genepi.AppMenuBar extends javax.swing.JMenuBar implements Serializable

Serialized Fields

mother

javax.swing.JFrame mother

mask

int mask

listener

java.awt.event.ActionListener listener

fileMenu

javax.swing.JMenu fileMenu

openMenuItem

javax.swing.JMenuItem openMenuItem

quitMenuItem

javax.swing.JMenuItem quitMenuItem

runMenu

javax.swing.JMenu runMenu

runMenuItem

javax.swing.JMenuItem runMenuItem

sbsMenuItem

javax.swing.JMenuItem sbsMenuItem

debugMenu

javax.swing.JMenu debugMenu

dotMenuItem

javax.swing.JMenuItem dotMenuItem

Class org.genepi.AppWindow extends javax.swing.JFrame implements Serializable

Serialized Fields

tabbedPane

javax.swing.JTabbedPane tabbedPane

header

HeaderPanel header

glassPane

GlassPane glassPane

Class org.genepi.Document extends javax.swing.JPanel implements Serializable

Serialized Fields

shell

BlackboardShell shell

agenda

AgendaView agenda

bb

BlackboardView bb

footLabel

javax.swing.JLabel footLabel

desk

javax.swing.JDesktopPane desk

ifBB

javax.swing.JInternalFrame ifBB

ifOut

javax.swing.JInternalFrame ifOut

Package org.genepi.means

Class org.genepi.means.MeanException extends java.lang.RuntimeException implements Serializable

serialVersionUID: 1L

Serialized Fields

cause

java.lang.Throwable cause
Exception that might have caused this one.


Package org.genepi.parser

Class org.genepi.parser.ParseException extends java.lang.RuntimeException implements Serializable

Serialized Fields

cause

java.lang.Throwable cause
Exception that might have caused this one.


location

Location location
Location in the build file where the exception occured

Class org.genepi.parser.RootHanlder extends java.lang.Object implements Serializable


Package org.genepi.swing

Class org.genepi.swing.AgendaView extends javax.swing.JPanel implements Serializable

Serialized Fields

listing

javax.swing.JList listing

model

Agenda model

listModel

javax.swing.DefaultListModel listModel

Class org.genepi.swing.BlackboardView extends javax.swing.JPanel implements Serializable

Serialized Fields

model

Blackboard model

intervalsPane

ZoomableIntervalView intervalsPane

genericPane

GenericViews genericPane

Class org.genepi.swing.Console extends javax.swing.JPanel implements Serializable

Serialized Fields

display

javax.swing.JTextArea display

consoleFont

java.awt.Font consoleFont

outputDevice

ObservableStream outputDevice

outputStream

java.io.PrintStream outputStream

df

java.text.SimpleDateFormat df

Class org.genepi.swing.GenericDomainView extends javax.swing.JPanel implements Serializable

Serialized Fields

model

Domain model

backGround

java.awt.Color backGround

bl

javax.swing.BoxLayout bl

domainLabel

javax.swing.JLabel domainLabel

Class org.genepi.swing.GenericViews extends javax.swing.JPanel implements Serializable

Serialized Fields

title

javax.swing.JLabel title

domainMap

java.util.Map domainMap

Class org.genepi.swing.GlassPane extends javax.swing.JPanel implements Serializable

Serialized Fields

frame

javax.swing.JFrame frame

installed

boolean installed

previousGlassPane

java.awt.Component previousGlassPane

timer

javax.swing.Timer timer

delay

int delay

message

java.lang.String message

Class org.genepi.swing.HeaderPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

icon

javax.swing.ImageIcon icon

top

javax.swing.JLabel top

bottom

javax.swing.JLabel bottom

Class org.genepi.swing.IntervalView extends javax.swing.JComponent implements Serializable

serialVersionUID: 1L

Serialized Fields

normalHue

java.awt.Color normalHue

interval

Interval interval

haveFocus

boolean haveFocus

Class org.genepi.swing.JMultiLineToolTip extends javax.swing.JToolTip implements Serializable

Serialized Fields

tipText

java.lang.String tipText

component

javax.swing.JComponent component

columns

int columns

fixedwidth

int fixedwidth

Class org.genepi.swing.Messager extends javax.swing.JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

display

javax.swing.JTextArea display

consoleFont

java.awt.Font consoleFont

df

java.text.SimpleDateFormat df

Class org.genepi.swing.SplashScreen extends javax.swing.JWindow implements Serializable

Serialized Fields

image

javax.swing.ImageIcon image

jlImage

javax.swing.JLabel jlImage

filepath

java.lang.String filepath

Class org.genepi.swing.TimeLinePane extends javax.swing.JPanel implements Serializable

Serialized Fields

model

Blackboard model

domainMap

java.util.Map domainMap

Class org.genepi.swing.TimeLineView extends javax.swing.JPanel implements Serializable

Serialized Fields

parent

javax.swing.JFrame parent

model

TimeLine model

tl

TimeLineLayout tl

ranColor

float ranColor

backGround

java.awt.Color backGround

tableViews

java.util.Map tableViews

pm

javax.swing.JPopupMenu pm

saveAsGffMenu

javax.swing.JMenuItem saveAsGffMenu

saveAsFastaMenu

javax.swing.JMenuItem saveAsFastaMenu

Class org.genepi.swing.ZoomableIntervalView extends javax.swing.JPanel implements Serializable

Serialized Fields

mask

int mask

viewsPane

TimeLinePane viewsPane

scroller

javax.swing.JScrollPane scroller