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Hierarchy For All Packages
Package Hierarchies:
org.blackbox.conditions
,
org.blackbox.domains
,
org.blackbox.hypothesis
,
org.blackbox.model
,
org.blackbox.shell
,
org.blackbox.test
,
org.blackbox.util
,
org.genepi
,
org.genepi.mean.parser
,
org.genepi.means
,
org.genepi.parser
,
org.genepi.rete
,
org.genepi.swing
Class Hierarchy
java.lang.Object
org.genepi.mean.parser.
AbstractParser
org.genepi.mean.parser.
BlastParserM9
org.genepi.mean.parser.
FastRnaParser
org.genepi.mean.parser.
GffParser
org.genepi.mean.parser.
LongOrfParser
org.genepi.mean.parser.
ProkovParser
org.genepi.mean.parser.
RbsFinderParser
org.genepi.mean.parser.
TermitParser
org.blackbox.shell.
BBX_SeqTool
org.genepi.
BlackboardShell
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
org.genepi.swing.
IntervalView
(implements org.blackbox.model.
ModelObserver
)
javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
org.genepi.
AppMenuBar
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.genepi.swing.
AgendaView
(implements org.blackbox.model.
ModelObserver
)
org.genepi.swing.
BlackboardView
(implements org.blackbox.model.
ModelObserver
)
org.genepi.swing.
Console
(implements org.genepi.swing.
StreamObserver
)
org.genepi.
Document
org.genepi.swing.
GenericDomainView
(implements org.blackbox.model.
ModelObserver
)
org.genepi.swing.
GenericViews
org.genepi.swing.
GlassPane
(implements java.awt.event.ActionListener)
org.genepi.swing.
HeaderPanel
org.genepi.swing.
Messager
org.genepi.swing.
TimeLinePane
org.genepi.swing.
TimeLineView
(implements java.awt.event.ActionListener, org.blackbox.model.
ModelObserver
)
org.genepi.swing.
ZoomableIntervalView
(implements java.awt.event.ActionListener)
javax.swing.JToolTip (implements javax.accessibility.Accessible)
org.genepi.swing.
JMultiLineToolTip
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.genepi.
AppWindow
javax.swing.JWindow (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer)
org.genepi.swing.
SplashScreen
org.genepi.parser.
ConfigParser
org.genepi.
Configuration
org.blackbox.conditions.
ContextCondition
(implements org.framboise_22.rete.Condition)
org.blackbox.conditions.
Include
org.blackbox.conditions.
Meet
org.blackbox.conditions.
No
org.blackbox.conditions.
Overlap
org.blackbox.conditions.
Yes
org.blackbox.model.
Controller
org.blackbox.shell.
BBX_Controller
org.blackbox.model.
Event
org.genepi.
Genepi
org.genepi.means.
GenericReader
org.xml.sax.HandlerBase (implements org.xml.sax.DocumentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
org.genepi.parser.
DefaultHandler
org.blackbox.model.
Hypothesis
(implements org.blackbox.model.
ObservableEntity
)
org.blackbox.hypothesis.
HAnnotation
(implements java.lang.Comparable, org.blackbox.model.
Interval
)
org.blackbox.shell.
BBX_Annotation
org.blackbox.hypothesis.
HEngineEvent
org.blackbox.shell.
BBX_EngineEvent
org.blackbox.hypothesis.
HFile
org.blackbox.shell.
BBX_File
org.blackbox.hypothesis.
HPattern
(implements org.blackbox.model.
Interval
)
org.blackbox.shell.
BBX_Pattern
org.blackbox.hypothesis.
HSequence
(implements java.lang.Comparable, org.blackbox.model.
Interval
)
org.blackbox.shell.
BBX_Sequence
(implements java.lang.Comparable)
org.blackbox.hypothesis.
HSetOf
org.blackbox.shell.
BBX_SetOf
org.blackbox.hypothesis.
HSetOfInterval
(implements java.lang.Comparable, org.blackbox.model.
Interval
)
org.blackbox.shell.
BBX_SetOfInterval
org.blackbox.hypothesis.
HSimpleInterval
(implements java.lang.Comparable, org.blackbox.model.
Interval
)
org.blackbox.shell.
BBX_SimpleInterval
org.blackbox.test.
SimpleHInterval
(implements java.lang.Comparable, org.blackbox.model.
Interval
)
org.genepi.swing.
HypothesisInspector
org.blackbox.util.
IntervalUtil
org.genepi.parser.
Keywords
org.blackbox.model.
KnowledgeSource
(implements org.blackbox.model.
ObservableEntity
, org.framboise_22.rete.Rule)
org.genepi.
Pipeline
org.blackbox.test.
SimpleKS
org.blackbox.model.
KSAR
(implements java.lang.Comparable)
org.genepi.parser.
Location
org.genepi.means.
MeansUtil
org.blackbox.shell.
ObserverPatternImpl
(implements org.blackbox.model.
ObservableEntity
)
org.blackbox.shell.
BBX_Agenda
(implements org.blackbox.model.
Agenda
, org.framboise_22.rete.util.Observer)
org.blackbox.shell.
BBX_Blackboard
(implements org.blackbox.model.
Blackboard
)
org.blackbox.shell.
BBX_KSFarm
(implements org.blackbox.model.
KsFarm
)
org.blackbox.domains.
BlackHole
(implements org.blackbox.model.
Domain
)
org.blackbox.domains.
List
(implements org.blackbox.model.
Domain
)
org.blackbox.domains.
TimeLine
(implements org.blackbox.model.
Domain
)
java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
java.io.ByteArrayOutputStream
org.genepi.swing.
ObservableStream
org.blackbox.util.
Pair
org.blackbox.model.
Pattern
(implements org.framboise_22.rete.Predicate)
org.genepi.
Resource
org.genepi.rete.
ReteMatcher
(implements org.blackbox.model.
PatternMatcher
)
org.blackbox.test.
SimpleInterval
(implements org.blackbox.model.
Interval
)
org.blackbox.util.
StringUtil
org.genepi.swing.
SwingUtils
org.genepi.
Task
org.genepi.means.
Filter
org.genepi.means.
Loader
org.genepi.means.
Null
org.genepi.means.
Pack
org.genepi.means.
PackInterval
org.genepi.means.
PostInterGenic
org.genepi.means.
PublishFile
org.genepi.means.
PublishToken
org.genepi.means.
RepostHypothesis
org.genepi.means.
Salience
org.genepi.means.
SIMIResolver
org.genepi.means.
TinaShell
(implements org.genepi.mean.parser.
FeatureHandler
)
org.genepi.means.
Blastp
org.genepi.means.
Blastx
org.genepi.means.
FastRna
org.genepi.means.
ProkovCds
org.genepi.means.
ProkovCds2
org.genepi.means.
ProkovLearn
org.genepi.means.
ProkovOrf
org.genepi.means.
RbsFinder
org.genepi.means.
Termit
org.genepi.means.
Touch
org.genepi.means.
WriteLn
org.genepi.means.
Zoom
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
java.lang.RuntimeException
org.blackbox.shell.
BBX_Exception
org.blackbox.shell.
BBX_ShellException
org.genepi.means.
MeanException
org.genepi.parser.
ParseException
org.genepi.swing.
TimeLineLayout
(implements java.awt.LayoutManager2)
org.framboise_22.rete.util.Tuple
org.blackbox.model.
Context
Interface Hierarchy
java.lang.Comparable
org.blackbox.model.
Domain
(also extends org.blackbox.model.
ObservableEntity
)
org.genepi.mean.parser.
FeatureHandler
org.blackbox.model.
Interval
org.blackbox.model.
ModelObserver
org.blackbox.model.
ObservableEntity
org.blackbox.model.
Agenda
org.blackbox.model.
Blackboard
org.blackbox.model.
Domain
(also extends java.lang.Comparable)
org.blackbox.model.
PatternMatcher
org.framboise_22.rete.RuleSet
org.blackbox.model.
KsFarm
org.genepi.swing.
StreamObserver
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