org.blackbox.shell
Class BBX_SeqTool
java.lang.Object
org.blackbox.shell.BBX_SeqTool
public class BBX_SeqTool
- extends java.lang.Object
Method Summary |
static org.biojava.bio.seq.Sequence |
reverseComplement(java.lang.String creator,
java.lang.String type,
org.biojava.bio.seq.Sequence seq)
|
static org.biojava.bio.seq.Sequence |
subSequence(int from,
int to,
java.lang.String creator,
java.lang.String type,
org.biojava.bio.seq.Sequence seq)
|
static org.biojava.bio.seq.Sequence |
translate(java.lang.String creator,
java.lang.String type,
org.biojava.bio.seq.Sequence seq)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
BBX_SeqTool
public BBX_SeqTool()
reverseComplement
public static org.biojava.bio.seq.Sequence reverseComplement(java.lang.String creator,
java.lang.String type,
org.biojava.bio.seq.Sequence seq)
throws java.lang.RuntimeException
- Throws:
java.lang.RuntimeException
translate
public static org.biojava.bio.seq.Sequence translate(java.lang.String creator,
java.lang.String type,
org.biojava.bio.seq.Sequence seq)
throws java.lang.RuntimeException
- Throws:
java.lang.RuntimeException
subSequence
public static org.biojava.bio.seq.Sequence subSequence(int from,
int to,
java.lang.String creator,
java.lang.String type,
org.biojava.bio.seq.Sequence seq)