org.genepi.means
Class GenericReader
java.lang.Object
org.genepi.means.GenericReader
public class GenericReader
- extends java.lang.Object
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
FORMAT_FASTA
public static final java.lang.String FORMAT_FASTA
- See Also:
- Constant Field Values
FORMAT_EMBL
public static final java.lang.String FORMAT_EMBL
- See Also:
- Constant Field Values
FORMAT_SWISS
public static final java.lang.String FORMAT_SWISS
- See Also:
- Constant Field Values
FORMAT_GENPEPT
public static final java.lang.String FORMAT_GENPEPT
- See Also:
- Constant Field Values
DNA_TYPE
public static final java.lang.String DNA_TYPE
- See Also:
- Constant Field Values
AA_TYPE
public static final java.lang.String AA_TYPE
- See Also:
- Constant Field Values
RNA_TYPE
public static final java.lang.String RNA_TYPE
- See Also:
- Constant Field Values
db
public org.biojava.bio.seq.SequenceIterator db
seqdb
public java.util.List seqdb
GenericReader
public GenericReader(java.lang.String filename,
java.lang.String type,
java.lang.String format,
KnowledgeSource c)
getSequenceIterator
public java.util.Iterator getSequenceIterator()
throws MeanException
- Throws:
MeanException