org.genepi.means
Class GenericReader

java.lang.Object
  extended by org.genepi.means.GenericReader

public class GenericReader
extends java.lang.Object


Field Summary
static java.lang.String AA_TYPE
           
 org.biojava.bio.seq.SequenceIterator db
           
static java.lang.String DNA_TYPE
           
static java.lang.String FORMAT_EMBL
           
static java.lang.String FORMAT_FASTA
           
static java.lang.String FORMAT_GENPEPT
           
static java.lang.String FORMAT_SWISS
           
static java.lang.String RNA_TYPE
           
 java.util.List seqdb
           
 
Constructor Summary
GenericReader(java.lang.String filename, java.lang.String type, java.lang.String format, KnowledgeSource c)
           
 
Method Summary
 java.util.Iterator getSequenceIterator()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

FORMAT_FASTA

public static final java.lang.String FORMAT_FASTA
See Also:
Constant Field Values

FORMAT_EMBL

public static final java.lang.String FORMAT_EMBL
See Also:
Constant Field Values

FORMAT_SWISS

public static final java.lang.String FORMAT_SWISS
See Also:
Constant Field Values

FORMAT_GENPEPT

public static final java.lang.String FORMAT_GENPEPT
See Also:
Constant Field Values

DNA_TYPE

public static final java.lang.String DNA_TYPE
See Also:
Constant Field Values

AA_TYPE

public static final java.lang.String AA_TYPE
See Also:
Constant Field Values

RNA_TYPE

public static final java.lang.String RNA_TYPE
See Also:
Constant Field Values

db

public org.biojava.bio.seq.SequenceIterator db

seqdb

public java.util.List seqdb
Constructor Detail

GenericReader

public GenericReader(java.lang.String filename,
                     java.lang.String type,
                     java.lang.String format,
                     KnowledgeSource c)
Method Detail

getSequenceIterator

public java.util.Iterator getSequenceIterator()
                                       throws MeanException
Throws:
MeanException