org.genepi.means
Class ProkovCds

java.lang.Object
  extended by org.genepi.Task
      extended by org.genepi.means.TinaShell
          extended by org.genepi.means.ProkovCds
All Implemented Interfaces:
FeatureHandler

public class ProkovCds
extends TinaShell


Field Summary
 
Fields inherited from class org.genepi.means.TinaShell
cmd, isFramed, itResults, progName, seqMother, shellCommand
 
Fields inherited from class org.genepi.Task
inputs, outputs
 
Constructor Summary
ProkovCds()
           
 
Method Summary
 void attrMinLen(java.lang.String ml)
           
protected  void extractRecords()
           
protected  void prepare()
           
protected  void setScriptName()
           
 
Methods inherited from class org.genepi.means.TinaShell
execute, featureReady
 
Methods inherited from class org.genepi.Task
afterExec, beforeExec, flush, getConfiguration, getInputs, getOutputs, getOwningKS, message, process, setConfiguration, setInputs, setOwningKS
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ProkovCds

public ProkovCds()
Method Detail

attrMinLen

public void attrMinLen(java.lang.String ml)

setScriptName

protected void setScriptName()
Specified by:
setScriptName in class TinaShell

prepare

protected void prepare()
Specified by:
prepare in class TinaShell

extractRecords

protected void extractRecords()
                       throws MeanException
Specified by:
extractRecords in class TinaShell
Throws:
MeanException