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java.lang.Objectorg.blackbox.model.Hypothesis
org.blackbox.hypothesis.HSequence
org.blackbox.shell.BBX_Sequence
public class BBX_Sequence
Field Summary |
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Fields inherited from class org.blackbox.model.Hypothesis |
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curEvent |
Constructor Summary | |
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BBX_Sequence(org.biojava.bio.seq.Sequence seq,
Domain home,
KnowledgeSource creator)
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Method Summary | |
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java.lang.Object |
clone()
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int |
getFrame()
Frame of this interval. |
int |
getLength()
Retourne la taille de cet intervalle. |
int |
getMax()
Retourne la plus grande des deux coordonnees. |
int |
getMin()
Retourne la plus petite des deux coordonnees. |
java.lang.String |
getName()
Name of this sequence. |
boolean |
getStrand()
Strand holding this interval. |
boolean |
isFramed()
Return true if this interval is framed. |
java.lang.String |
seqString()
String representation for this interval. |
java.lang.String |
toString()
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Methods inherited from class org.blackbox.hypothesis.HSequence |
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compareTo |
Methods inherited from class org.blackbox.model.Hypothesis |
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addObserver, gainFocus, getDomainOrigin, getKnowledge, getKsCreator, loseFocus, notifyObservers, removeObserver, setDomainOrigin, setKnowledge, setKsCreator |
Methods inherited from class java.lang.Object |
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equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.lang.Comparable |
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compareTo |
Constructor Detail |
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public BBX_Sequence(org.biojava.bio.seq.Sequence seq, Domain home, KnowledgeSource creator)
Method Detail |
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public java.lang.String getName()
HSequence
getName
in class HSequence
public java.lang.String seqString()
Interval
seqString
in interface Interval
public int getMin()
Interval
getMin
in interface Interval
public int getMax()
Interval
getMax
in interface Interval
public int getLength()
Interval
getLength
in interface Interval
public java.lang.String toString()
toString
in class java.lang.Object
public int getFrame()
Interval
getFrame
in interface Interval
public boolean getStrand()
Interval
getStrand
in interface Interval
public boolean isFramed()
Interval
isFramed
in interface Interval
public java.lang.Object clone()
clone
in class Hypothesis
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