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java.lang.Objectorg.genepi.Task
org.genepi.means.TinaShell
org.genepi.means.Blastp
public class Blastp
Field Summary |
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Fields inherited from class org.genepi.means.TinaShell |
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cmd, isFramed, itResults, progName, seqMother, shellCommand |
Fields inherited from class org.genepi.Task |
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inputs, outputs |
Constructor Summary | |
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Blastp()
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Method Summary | |
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void |
attrLimitRes(java.lang.String l)
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protected void |
extractRecords()
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void |
featureReady(int from,
int to,
boolean sens,
java.util.Hashtable annot)
RedŽfinition de l'interface FeatureHandler necessaire pour mapper les coordonnŽe proteique->nuclŽique (*3). |
protected void |
prepare()
Dump des donnees en entree en TINA. |
protected void |
setScriptName()
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Methods inherited from class org.genepi.means.TinaShell |
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execute |
Methods inherited from class org.genepi.Task |
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afterExec, beforeExec, flush, getConfiguration, getInputs, getOutputs, getOwningKS, message, process, setConfiguration, setInputs, setOwningKS |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public Blastp()
Method Detail |
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public void attrLimitRes(java.lang.String l)
protected void setScriptName()
setScriptName
in class TinaShell
protected void prepare()
prepare
in class TinaShell
protected void extractRecords() throws MeanException
extractRecords
in class TinaShell
MeanException
public void featureReady(int from, int to, boolean sens, java.util.Hashtable annot)
featureReady
in interface FeatureHandler
featureReady
in class TinaShell
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