A B C D E F G H I K L M N O P Q R S T U V W X

S

SameVertexException - Exception in helix.graph.model
 
SameVertexException() - Constructor for exception helix.graph.model.SameVertexException
 
SameVertexException(String) - Constructor for exception helix.graph.model.SameVertexException
 
SameVertexException(Throwable) - Constructor for exception helix.graph.model.SameVertexException
 
serialize() - Method in class helix.graph.model.impl.AbstractRegistryValue
 
serialize() - Method in class helix.graph.model.impl.RObject
 
serialize() - Method in class helix.graph.model.impl.RVertex
 
serialize() - Method in class helix.graph.model.impl.RVertexArray
 
serialize() - Method in class helix.graph.model.impl.RVertexList
 
serialize() - Method in class helix.graph.model.impl.RVertexSet
 
serialize() - Method in class helix.graph.model.impl.RVoid
 
serialize() - Method in interface helix.graph.model.RegistryValue
get a String representation of this instance.
set(String) - Method in class helix.graph.model.impl.AbstractRegistry
 
set(String, String) - Method in class helix.graph.model.impl.AbstractRegistry
 
set(String, int) - Method in class helix.graph.model.impl.AbstractRegistry
 
set(String, float) - Method in class helix.graph.model.impl.AbstractRegistry
 
set(String, boolean) - Method in class helix.graph.model.impl.AbstractRegistry
 
set(String, RegistryValue) - Method in class helix.graph.model.impl.DelegateRegistry
 
set(String, RegistryValue) - Method in class helix.graph.model.impl.memory.MemRegistry
 
set(Object) - Method in class helix.graph.model.impl.RObject
 
set(Vertex) - Method in class helix.graph.model.impl.RVertex
 
set(String, RegistryValue) - Method in interface helix.graph.model.Registry
 
set(String) - Method in interface helix.graph.model.Registry
 
set(String, String) - Method in interface helix.graph.model.Registry
 
set(String, int) - Method in interface helix.graph.model.Registry
 
set(String, float) - Method in interface helix.graph.model.Registry
 
set(String, boolean) - Method in interface helix.graph.model.Registry
 
set_aggregator(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_algo(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
new stubs
set_check(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_cleanup(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_colors(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_compressor(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_debug(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_deltaeps(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_deltagap(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_deltashuf(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_help(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
override stubs
set_help(List<String>) - Method in class helix.graph.util.CommandLine
default stub for help invocation
set_ismulti(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_lookahead(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_maxstar(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_memdog(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_mincore(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_mineltsize(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_minsize(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_nbproc(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_optimizer(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
set_reportgaps(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_reportogs(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_tandem(List<String>) - Method in class helix.graph.program.isofun.IsofunOptions
 
set_verbose(List<String>) - Method in class helix.graph.algo.c3part.C3PartOptions
 
setAccuracy(int) - Static method in class helix.graph.util.MemoryBench
 
setColor(int, boolean) - Method in class helix.graph.model.impl.RColorSet
set/unset color in this ColorSet
setColor(int) - Method in class helix.graph.model.impl.RColorSet
set color in this ColorSet same as : setColor(i, true)
setColors(RColorSet) - Method in class helix.graph.model.impl.RColorSet
set all colors in this ColorSet at same values as in argument same as this.clearColors(); this.orColors(cset);
setHeader(Logger, String) - Static method in class helix.graph.util.LogUtil
set log formatter header return previous header
setHeader(String) - Method in class helix.graph.util.SimpleLogFormatter
 
setIndentSpaces(int) - Method in class helix.graph.util.GraphDebugger
set number of spaces for one indentation
setLogger(Logger) - Method in class helix.graph.util.GraphDebugger
change current logger
setLogger(Logger) - Static method in class helix.graph.util.Reporter
set Logger
setMultinode(Vertex, Vertex) - Static method in class helix.graph.algo.c3part.C3PartUtil
record in datanode v the multinode V such that Nodes(V) = (v).
setOptimizer(Registry, ColorOptimizer) - Static method in class helix.graph.algo.c3part.C3PartUtil
set the color optimizer into the registry
setOptions(C3PartOptions) - Method in class helix.graph.algo.c3part.C3PartAbstract
set options time to check for option incompatibilities
setOptions(C3PartOptions) - Method in class helix.graph.algo.c3part.C3PartAbstractXFS
 
setOptions(C3PartOptions) - Method in interface helix.graph.algo.c3part.C3PartAlgo
set algorithm options note: this may throw an Exception if options are incompatible with this algo
setOptions(C3PartOptions) - Method in class helix.graph.algo.c3part.C3PartDFSQ
 
setPrinter(PrintStream) - Static method in class helix.graph.util.Reporter
set Printer
setRoot(Vertex, Vertex) - Static method in class helix.graph.algo.c3part.C3PartUtil
record Root multinode in multinode V (also add V in Aliases(Root))
setSeed(long) - Method in class helix.graph.algo.AbstractRandomGenerator
 
setSeed(long) - Method in interface helix.graph.algo.RandomGenerator
 
setUsage(String) - Method in class helix.graph.util.CommandLine
set usage description
setVerbose(boolean) - Method in class helix.graph.util.GraphDebugger
set logger on/off return previous value
setVerbose(Logger, boolean) - Static method in class helix.graph.util.LogUtil
enable/disable Logging return previous state
setVertex(int, Vertex) - Method in class helix.graph.model.impl.RVertexArray
 
setVertex(int, Vertex) - Method in class helix.graph.model.impl.RVertexList
 
severe(String) - Static method in class helix.graph.util.Reporter
log severe error
shift(int) - Method in class helix.graph.model.impl.RColorSet
shift bits to left or right in this ColorSet by specified amount.
shift(int) - Method in class helix.graph.util.IPermutation
returns a new permutation with values shifted the specified offset.
shift() - Method in class helix.graph.util.IPermutation
same as permutation.shift(-permutation.from()) i.e.
shortestPath(Vertex) - Method in class helix.graph.algo.Dijkstra
get shortest path from source to target return a list [source, ..., target] or empty list if there is no path
shutdown() - Method in class helix.graph.util.ConcurrentService
 
SimpleLogFormatter - Class in helix.graph.util
 
SimpleLogFormatter() - Constructor for class helix.graph.util.SimpleLogFormatter
 
SimpleLogFormatter(String) - Constructor for class helix.graph.util.SimpleLogFormatter
 
singleColor() - Method in class helix.graph.model.impl.RColorSet
if this ColorSet has a single color return this color else throws an IllegalValueException
size() - Method in class helix.graph.model.impl.RVertexArray
 
size() - Method in class helix.graph.model.impl.RVertexList
 
size() - Method in class helix.graph.model.impl.RVertexSet
 
size() - Method in class helix.graph.util.IPermutation
size of permutation
StarGenerator - Class in helix.graph.algo
 
StarGenerator(int) - Constructor for class helix.graph.algo.StarGenerator
 
start(boolean) - Method in class helix.graph.util.StopWatch
Start the stopwatch.
start() - Method in class helix.graph.util.StopWatch
Start the stopwatch - with reset same as start(true)
stop() - Method in class helix.graph.util.StopWatch
Stop the stopwatch.
stopRun() - Method in class helix.graph.util.MemoryWatcher
 
StopWatch - Class in helix.graph.util
a better stopwatch : you don't need to stop it all the time.
here are valid sequences :
start stop get start start get ...
StopWatch() - Constructor for class helix.graph.util.StopWatch
Constructor : default / use Logger.global as logger
StopWatch(Logger) - Constructor for class helix.graph.util.StopWatch
Constructor : default / use Logger.global as logger
storeSet(GSet<Vertex>) - Method in class helix.graph.algo.c3part.compressor.AbstractCompressor
temporarily stores a copy of set of vertices optional operation
storeSet(GSet<Vertex>) - Method in interface helix.graph.algo.c3part.compressor.GraphCompressor
temporarily stores a set of vertices this is an optional operation
storeSet(GSet<Vertex>) - Method in class helix.graph.algo.c3part.compressor.NoCompressor
 
stringToBool(String) - Static method in class helix.graph.util.CommandLine
 
stringToInt(String, int) - Static method in class helix.graph.util.CommandLine
 
subGraph(Graph, Iterable<Vertex>) - Static method in class helix.graph.algo.Cloner
make a subgraph from graph restricted to given vertices
subsumes(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.AbstractMultiCompressor
tells if vertex V subsumes vertex U
subsumes(Vertex, Vertex, Graph) - Method in interface helix.graph.algo.c3part.compressor.GraphCompressor
tells if vertex v subsumes vertex u
subsumes(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.NoCompressor
 
subsumes_(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.AbstractMultiCompressor
delegate subsumption
subsumes_(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.MultiIdentCompressor
delegate subsumption
subsumes_(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.MultiInColorsCompressor
delegate subsumption
subsumes_(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.MultiInSetColorsCompressor
delegate subsumption
subsumes_(Vertex, Vertex, Graph) - Method in class helix.graph.algo.c3part.compressor.MultiInSetCompressor
delegate subsumption

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