helix.graph.program.isofun
Class IsofunOptions
java.lang.Object
helix.graph.util.CommandLine
helix.graph.algo.c3part.C3PartOptions
helix.graph.program.isofun.IsofunOptions
public class IsofunOptions
- extends C3PartOptions
Fields inherited from class helix.graph.algo.c3part.C3PartOptions |
ALLPATH_LOOKAHEAD, CC_AGGREGATOR, ccDenseMode, ccDensity, CENTER_AGGREGATOR, CLIQUE_AGGREGATOR, colors, compressor, concthresh, debug, deltaShuf, DENSE_AGGREGATOR, DENSE_MODE_ABSOLUTE, DENSE_MODE_QUANTILE, DENSE_MODE_RELATIVE, FULLCOLOR_LOOKAHEAD, GLOBAL_OPTIMIZER, IDENT_COMPRESSOR, INCOLOR_COMPRESSOR, INSET_COMPRESSOR, INSETCOLOR_COMPRESSOR, ismulti, LOCAL_OPTIMIZER, logger, lookaheadName, maxstar, mincore, mineltsize, minsize, nbproc, NO_COMPRESSOR, NO_OPTIMIZER, nodeAggregatorName, ONEWAYPATH_LOOKAHEAD, OPTIMIZER_MODE_MAX, OPTIMIZER_MODE_MIN, optimizerMode, optimizerName, TREE_AGGREGATOR, TWOWAYPATH_LOOKAHEAD, USER_OPTIMIZER, userColors, verbose |
Methods inherited from class helix.graph.algo.c3part.C3PartOptions |
set_aggregator, set_colors, set_compressor, set_debug, set_deltashuf, set_help, set_ismulti, set_lookahead, set_maxstar, set_mincore, set_mineltsize, set_minsize, set_nbproc, set_optimizer, set_verbose |
algoName
public String algoName
check
public boolean check
cleanup
public boolean cleanup
tandem
public boolean tandem
tandemMinSize
public int tandemMinSize
tandemMinFrac
public int tandemMinFrac
reportGaps
public boolean reportGaps
memdog
public boolean memdog
deltaGap
public List<Integer> deltaGap
deltaEps
public List<Integer> deltaEps
reportOGs
public boolean reportOGs
IsofunOptions
public IsofunOptions(String[] args)
getAlgoForName
public static C3PartAlgo getAlgoForName(String name,
Graph graph)
- get proper algorithm from name
parse
public void parse()
throws CommandLineException
- override parse to further check user options.
note: further checking may also be done in the
setOptions
method for each algo.
- Overrides:
parse
in class CommandLine
- Throws:
CommandLineException
set_algo
public void set_algo(List<String> args)
- new stubs
set_check
public void set_check(List<String> args)
set_cleanup
public void set_cleanup(List<String> args)
set_tandem
public void set_tandem(List<String> args)
set_reportgaps
public void set_reportgaps(List<String> args)
set_reportogs
public void set_reportogs(List<String> args)
set_memdog
public void set_memdog(List<String> args)
set_deltagap
public void set_deltagap(List<String> args)
set_deltaeps
public void set_deltaeps(List<String> args)